Machine Learning Boot Camp: Analyzing Biomedical and Health Data

Next Machine Learning Boot Camp in NYC: June 6-7, 2019! Sign up below for updates.

 

The Machine Learning Boot Camp is a two-day intensive boot camp of seminars combined with hands-on R sessions to provide an overview of concepts, techniques, and data analysis methods with applications in biomedical research.      

 

 

Subscribe here for registration deadlines and course updates.


 
 

Training OVERVIEW

Summer 2019 dates: June 6-7; 9:00am - 5:00pm

This two-day intensive training will provide a broad introduction to machine learning methodology with applications in biomedical research. Taught by a team of biostatisticians, the Boot Camp will integrate seminar lectures with hands-on R lab sessions to put concepts into practice. Emphasis will be given to supervised (e.g., penalized methods, classification and decision trees, survival forests) and unsupervised methods (e.g., clustering algorithms, principal components) with numerous case studies and biomedical applications. The workshop will conclude with a brief overview on ‘deep learning’ approaches DOs and DON’Ts.

By the end of the boot camp, participants will be familiar with the following topics:

  • Penalized Regression Methods (Ridge and Lasso)
  • Support Vector Machines
  • Decision Trees (Random Forest)
  • Predicting Survival Outcomes (Cox Regression/Lasso, Survival Forests)
  • Clustering Algorithms
  • Principle Component Analysis (PCA)
  • Deep Learning – An Overview

Investigators at all career stages are welcome to attend, and we particularly encourage trainees and early-stage investigators to participate.

PREREQUISITES AND REQUIREMENTS

  1. Each participant must have an introductory background in statistics.
  2. Each participant is encouraged to be familiar with R. The main software used for the workshop will be R/RStudio, therefore we strongly recommend that participants have a basic understanding of this software prior to attending the Training. Still, it is ok if you have never used R before because a brief tutorial/refresher will be provided on the first day of Training.
  3. Each participant is required to bring a personal laptop with R/RStudio installed prior to the first day of the workshop, as all lab sessions will be done on your personal laptop. R is available for free download and installation on Mac, PC, and Linux devices.

R INSTALLATION GUIDE

Basic R knowledge is highly recommended for the boot camp as noted in prerequisites above. If you are new to R or need a refresher, a brief tutorial will be offered on the first day of the boot camp.

  • R Installation Guide: R is the free software programming language we will use in the boot camp. Use this installation guide to choose the correct version for your laptop (Mac/Windows) and install it prior to the first day of the boot camp.

  • Introduction to R: A free edX class on R fundamentals using Datacamp platform 

If you have any specific questions about R and R studio in the context of the Machine Learning Boot Camp, please email us.

SCHOLARSHIPS

Training scholarships are available for the Machine Learning Boot Camp.

LOCATION

The Machine Learning Boot Camp will take place on the Columbia University Medical Center (CUMC) Campus in New York City, specifically at Columbia Mailman School of Public Health, 722 W. 168th Street, Allan Rosenfield Building 8th Floor Auditorium. Please note that the entrance to the building is on the 10th floor (training is located two floors below entrance).

General transportation and lodging information can be found in the Getting Around section of the Skills for Health and Research Professionals (SHARP) Training Program page. A PDF map of the 2019 Boot Camp location on the CUMC campus will be available closer to training dates. 

INSTRUCTORS

Noah Simon, PhD, Department of Biostatistics, School of Public Health, University of Washington. Dr. Simon’s methodological interests include computationally efficient methods for predictive modeling with high-dimensional, complex data, and the design of adaptive clinical trials.

Yifei Sun, PhD, Department of Biostatistics, Mailman School of Public Health, Columbia University. Dr. Sun’s research interests include survival and longitudinal data analysis and statistical machine learning for time-to-event data.

Cody Chiuzan, PhD, Department of Biostatistics, Mailman School of Public Health, Columbia University. Dr. Chiuzan’s research interests concern development of adaptive early-phase designs for oncology trials, including questions on the optimal study designs and endpoints for early-phase immune- and targeted-oncology agents. Dr. Chiuzan is the Director for Educational Initiatives of CTSA Biostatistics, Epidemiology and Research Design Resource (BERD) Resource.

REGISTRATION FEES

 Early-Bird Rate (through 4/15/19)Regular Rate (4/16/19 - 5/21/19)Columbia Discount*
Student/Postdoc/Trainee    $1,150 $1,35010%
Faculty/Academic Staff/Non-Profit Organizations$1,350 $1,55010%
Corporate/For-Profit Organizations$1,550$1,750NA

*Columbia Discount: This discount is valid for any active student, postdoc, staff, or faculty at Columbia University. To access Columbia discount, email Columbia.MachineLearning@gmail.com for instructions.

Registration Fee: includes course material, breakfast, lunch, and refreshment breaks. Course material will be available to all students after the workshop. Lodging and transportation are not included.  

Cancellations: Cancellation notices must be received via email at least 30 days prior to the workshop start date in order to receive a full refund, minus a $50 administrative fee. Cancellation notices received via email 14-29 days prior to the workshop will receive a 50% refund, minus a $50 administrative fee. Please email your cancellation notice to Columbia.MachineLearning@gmail.com. Due to workshop capacity, we regret that we are unable to refund registration fees for cancellations after these dates. 

If you are unable to attend the training, we encourage you to send a substitute within the same registration category. Please inform us of the substitute via email at least one week prior to the training to include them on attendee communications, updated registration forms, and materials. Should the substitute fall within a different registration category your credit card will be credited/charged respectively. Please email substitute inquiries to Columbia.MachineLearning@gmail.com.

ADDITIONAL INFORMATION

 

 

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Questions? Email the Boot Camp team here.

The Machine Learning Boot Camp is hosted by Columbia University's Department of Environmental Health Sciences and Department of Biostatistics in the Mailman School of Public Health, and the Irving Institute for Clinical and Translational Research: Biostatistics, Epidemiology, and Research Design (BERD) Educational Resource.